CRISPRone

CRISPRone report for GCA_900096185.1_ASM90009618v1

♦ Seq 1: FMKM01000005.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 216890 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91793-92285 bp Zoom in on locus 1 x8 CRISPR array Location: 91793-92285 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91793-92285 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91793-92285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKM01000007.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 204769 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91826-91987 bp Zoom in on locus 1 x3 CRISPR array Location: 91826-91987 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91826-91987 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91826-91987 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKM01000001.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 824762 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23953-25856 bp 2 Locus 2: 415304-416388 bp Zoom in on locus 1 x2 x3 Zoom in on locus 2 x17 CRISPR array Location: 23953-24048 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 23953-24048 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25695-25856 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 25695-25856 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 415304-416388 bp Num of repeats: 17 Spacers: s4-s19 CRISPR array Location: 415304-416388 bp Num of repeats: 17 Spacers: s4-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23953-24048 bp]: array | spacers
           [Locus range 25695-25856 bp]: array | spacers
           [Locus range 415304-416388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKM01000018.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68737 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4014-5098 bp Zoom in on locus 1 x17 CRISPR array Location: 4014-5098 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 4014-5098 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4014-5098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKM01000003.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 374240 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82930-83546 bp 2 Locus 2: 246818-255139 bp 3 Locus 3: 328422-328779 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 82930-83546 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 82930-83546 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 246818-249226 bp Gene: cd09693:cas5 Type: Type-I Location: 249253-250050 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250066-251082 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251102-252577 bp Gene: pfam01881:cas6 Type: other Location: 252582-253319 bp Gene: unk Type: unknown Location: 253420-253596 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254030-255139 bp CRISPR array Location: 328422-328779 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 328422-328779 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82930-83546 bp]: array | spacers
           [Locus range 328422-328779 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKM01000002.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 507510 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252726-263863 bp 2 Locus 2: 486241-486334 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252726-254325 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252726-254325 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254509-254775 bp Gene: cd09722:cas1 Type: universal Location: 254778-255758 bp Gene: pfam01930:cas4 Type: Type-I Location: 255761-256279 bp Gene: COG1203:cas3 Type: Type-I Location: 256327-258648 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258659-259360 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259362-260276 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260278-262128 bp Gene: pfam01881:cas6 Type: other Location: 262134-262928 bp Gene: pfam13280:WYL Type: other Location: 262949-263863 bp CRISPR array Location: 486241-486334 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486241-486334 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252726-254325 bp]: array | spacers
           [Locus range 486241-486334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKM01000010.1 Clostridioides difficile isolate CD105HS33 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 190785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18483-19175 bp Zoom in on locus 1 x11 CRISPR array Location: 18483-19175 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18483-19175 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18483-19175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)