CRISPRone

CRISPRone report for GCA_900096195.1_ASM90009619v1

♦ Seq 1: FMKI01000003.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 328330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86887-88035 bp Zoom in on locus 1 x18 CRISPR array Location: 86887-88035 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 86887-88035 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86887-88035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKI01000001.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 563255 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76837-76931 bp 2 Locus 2: 299328-310439 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 76837-76931 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 76837-76931 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 299328-300215 bp Gene: pfam01881:cas6 Type: other Location: 300293-301030 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 301036-302886 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 302888-303802 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 303804-304505 bp Gene: COG1203:cas3 Type: Type-I Location: 304516-306837 bp Gene: pfam01930:cas4 Type: Type-I Location: 306852-307403 bp Gene: cd09722:cas1 Type: universal Location: 307406-308386 bp Gene: cd09725:cas2 Type: universal Location: 308389-308655 bp CRISPR array Location: 308839-310439 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 308839-310439 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 76837-76931 bp]: array | spacers
           [Locus range 308839-310439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKI01000007.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 215994 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90929-91421 bp Zoom in on locus 1 x8 CRISPR array Location: 90929-91421 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90929-91421 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90929-91421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKI01000018.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68334 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3458-4608 bp Zoom in on locus 1 x18 CRISPR array Location: 3458-4608 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3458-4608 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3458-4608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKI01000011.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 191354 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19220-19711 bp Zoom in on locus 1 x8 CRISPR array Location: 19220-19711 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 19220-19711 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19220-19711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKI01000008.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 202252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110267-110427 bp Zoom in on locus 1 x3 CRISPR array Location: 110267-110427 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110267-110427 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110267-110427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKI01000002.1 Clostridioides difficile isolate CD105HS43 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370769 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80536-81152 bp 2 Locus 2: 244424-252745 bp 3 Locus 3: 326028-326385 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80536-81152 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80536-81152 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244424-246832 bp Gene: cd09693:cas5 Type: Type-I Location: 246859-247656 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247672-248688 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248708-250183 bp Gene: pfam01881:cas6 Type: other Location: 250188-250925 bp Gene: unk Type: unknown Location: 251026-251202 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251636-252745 bp CRISPR array Location: 326028-326385 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326028-326385 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80536-81152 bp]: array | spacers
           [Locus range 326028-326385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)