CRISPRone

CRISPRone report for GCA_900096205.1_ASM90009620v1

♦ Seq 1: FMKX01000007.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 210089 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90998-91421 bp Zoom in on locus 1 x7 CRISPR array Location: 90998-91421 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90998-91421 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90998-91421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKX01000016.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 92995 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72702-72795 bp Zoom in on locus 1 x2 CRISPR array Location: 72702-72795 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 72702-72795 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72702-72795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKX01000003.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 382258 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207248-217427 bp Zoom in on locus 1 x10 CRISPR array Location: 207248-207862 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 207248-207862 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 208046-208312 bp Gene: cd09722:cas1 Type: universal Location: 208315-209295 bp Gene: pfam01930:cas4 Type: Type-I Location: 209298-209816 bp Gene: COG1203:cas3 Type: Type-I Location: 209864-212185 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 212196-212897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 212899-213813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 213815-215692 bp Gene: pfam01881:cas6 Type: other Location: 215698-216435 bp Gene: pfam13280:WYL Type: other Location: 216513-217427 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 207248-207862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKX01000011.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 181039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122968-124380 bp Zoom in on locus 1 x22 CRISPR array Location: 122968-124380 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 122968-124380 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122968-124380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKX01000001.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 597411 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 352631-352793 bp 2 Locus 2: 426074-433930 bp Zoom in on locus 1 x3 Zoom in on locus 2 CRISPR array Location: 352631-352793 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 352631-352793 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 426074-427183 bp Gene: pfam01881:cas6 Type: other Location: 427441-428178 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 428183-429649 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 429669-430682 bp Gene: cd09693:cas5 Type: Type-I Location: 430698-431495 bp Gene: cd09641:cas3HD Type: Type-I Location: 431522-433930 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 352631-352793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKX01000015.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 115922 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18717-19340 bp 2 Locus 2: 100555-100716 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 CRISPR array Location: 18717-19340 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18717-19340 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 100555-100716 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 100555-100716 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18717-19340 bp]: array | spacers
           [Locus range 100555-100716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKX01000006.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 225239 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138931-139094 bp Zoom in on locus 1 x3 CRISPR array Location: 138931-139094 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138931-139094 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138931-139094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMKX01000002.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 486486 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252694-252922 bp 2 Locus 2: 298734-300338 bp Zoom in on locus 1 x4 Zoom in on locus 2 x25 CRISPR array Location: 252694-252922 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252694-252922 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 298734-300338 bp Num of repeats: 25 Spacers: s4-s27 CRISPR array Location: 298734-300338 bp Num of repeats: 25 Spacers: s4-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252694-252922 bp]: array | spacers
           [Locus range 298734-300338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FMKX01000022.1 Clostridioides difficile isolate CD105HS39 genome assembly, contig: contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 33168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30869-31754 bp Zoom in on locus 1 x14 CRISPR array Location: 30869-31754 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 30869-31754 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30869-31754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)