CRISPRone

CRISPRone report for GCA_900096215.1_ASM90009621v1

♦ Seq 1: FMLE01000002.1 Clostridioides difficile isolate CD105HS16 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 681019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498779-498872 bp Zoom in on locus 1 x2 CRISPR array Location: 498779-498872 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498779-498872 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498779-498872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLE01000001.1 Clostridioides difficile isolate CD105HS16 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 971161 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240435-240992 bp 2 Locus 2: 315251-323116 bp 3 Locus 3: 488864-489091 bp 4 Locus 4: 830470-830696 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 CRISPR array Location: 240435-240992 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240435-240992 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315251-316360 bp Gene: pfam01881:cas6 Type: other Location: 316618-317355 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317360-318835 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318855-319868 bp Gene: cd09693:cas5 Type: Type-I Location: 319884-320681 bp Gene: cd09641:cas3HD Type: Type-I Location: 320708-323116 bp CRISPR array Location: 488864-489091 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488864-489091 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830470-830696 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830470-830696 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240435-240992 bp]: array | spacers
           [Locus range 488864-489091 bp]: array | spacers
           [Locus range 830470-830696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLE01000003.1 Clostridioides difficile isolate CD105HS16 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 563375 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163864-164291 bp 2 Locus 2: 367885-368307 bp 3 Locus 3: 484699-485458 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 163864-164291 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 163864-164291 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 367885-368307 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 367885-368307 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 484699-485458 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 484699-485458 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 163864-164291 bp]: array | spacers
           [Locus range 367885-368307 bp]: array | spacers
           [Locus range 484699-485458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLE01000004.1 Clostridioides difficile isolate CD105HS16 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 378389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328152-329892 bp Zoom in on locus 1 x27 CRISPR array Location: 328152-329892 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 328152-329892 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 328152-329892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLE01000015.1 Clostridioides difficile isolate CD105HS16 genome assembly, contig: contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 45502 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36909-38883 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 36909-37726 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36909-37726 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38329-38883 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 38329-38883 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36909-37726 bp]: array | spacers
           [Locus range 38329-38883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)