CRISPRone

CRISPRone report for GCA_900096225.1_ASM90009622v1

♦ Seq 1: FMLT01000002.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 317730 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55183-65364 bp Zoom in on locus 1 x10 Gene: pfam13280:WYL Type: other Location: 55183-56097 bp Gene: pfam01881:cas6 Type: other Location: 56175-56912 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56918-58795 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58797-59711 bp Gene: cd09693:cas5 Type: Type-I Location: 59713-60414 bp Gene: COG1203:cas3 Type: Type-I Location: 60425-62746 bp Gene: pfam01930:cas4 Type: Type-I Location: 62761-63312 bp Gene: cd09722:cas1 Type: universal Location: 63315-64295 bp Gene: cd09725:cas2 Type: universal Location: 64298-64564 bp CRISPR array Location: 64748-65364 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 64748-65364 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64748-65364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLT01000029.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 13934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4982-5145 bp Zoom in on locus 1 x3 CRISPR array Location: 4982-5145 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4982-5145 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4982-5145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLT01000003.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 286288 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252693-252921 bp Zoom in on locus 1 x4 CRISPR array Location: 252693-252921 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252693-252921 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252693-252921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLT01000001.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 517863 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29062-29487 bp 2 Locus 2: 191907-199772 bp 3 Locus 3: 273053-273147 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 29062-29487 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29062-29487 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 191907-194315 bp Gene: cd09693:cas5 Type: Type-I Location: 194342-195139 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 195155-196168 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 196188-197663 bp Gene: pfam01881:cas6 Type: other Location: 197668-198405 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 198663-199772 bp CRISPR array Location: 273053-273147 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 273053-273147 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29062-29487 bp]: array | spacers
           [Locus range 273053-273147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLT01000006.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 252417 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19086-19709 bp 2 Locus 2: 194366-195778 bp Zoom in on locus 1 x10 Zoom in on locus 2 x22 CRISPR array Location: 19086-19709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 19086-19709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 194366-195778 bp Num of repeats: 22 Spacers: s10-s30 CRISPR array Location: 194366-195778 bp Num of repeats: 22 Spacers: s10-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19086-19709 bp]: array | spacers
           [Locus range 194366-195778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLT01000009.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 210662 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91369 bp Zoom in on locus 1 x7 CRISPR array Location: 90946-91369 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90946-91369 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLT01000026.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 27811 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7111-9295 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7111-7270 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7111-7270 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9071-9295 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9071-9295 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7111-7270 bp]: array | spacers
           [Locus range 9071-9295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMLT01000020.1 Clostridioides difficile isolate CD105LC6 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 69715 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45136-46807 bp Zoom in on locus 1 x26 CRISPR array Location: 45136-46807 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 45136-46807 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45136-46807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)