CRISPRone

CRISPRone report for GCA_900096235.1_ASM90009623v1

♦ Seq 1: FMMD01000013.1 Clostridioides difficile isolate CD105LC2 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 51096 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13424-14595 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 13424-13585 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13424-13585 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14236-14595 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 14236-14595 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13424-13585 bp]: array | spacers
           [Locus range 14236-14595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMD01000004.1 Clostridioides difficile isolate CD105LC2 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 446670 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121577-122659 bp 2 Locus 2: 439073-439167 bp Zoom in on locus 1 x17 Zoom in on locus 2 x2 CRISPR array Location: 121577-122659 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 121577-122659 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 439073-439167 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 439073-439167 bp Num of repeats: 2 Spacers: s17-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121577-122659 bp]: array | spacers
           [Locus range 439073-439167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMD01000001.1 Clostridioides difficile isolate CD105LC2 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 851633 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 361707-362523 bp 2 Locus 2: 525018-532874 bp 3 Locus 3: 606156-606581 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 361707-362523 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 361707-362523 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 525018-527426 bp Gene: cd09693:cas5 Type: Type-I Location: 527453-528250 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 528266-529279 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 529299-530765 bp Gene: pfam01881:cas6 Type: other Location: 530770-531507 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 531765-532874 bp CRISPR array Location: 606156-606581 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 606156-606581 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 361707-362523 bp]: array | spacers
           [Locus range 606156-606581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMD01000010.1 Clostridioides difficile isolate CD105LC2 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 119942 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8528-9408 bp 2 Locus 2: 99241-100782 bp Zoom in on locus 1 x3 x9 Zoom in on locus 2 x24 CRISPR array Location: 8528-8687 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8528-8687 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8857-9408 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 8857-9408 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 99241-100782 bp Num of repeats: 24 Spacers: s11-s33 CRISPR array Location: 99241-100782 bp Num of repeats: 24 Spacers: s11-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8528-8687 bp]: array | spacers
           [Locus range 8857-9408 bp]: array | spacers
           [Locus range 99241-100782 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMD01000003.1 Clostridioides difficile isolate CD105LC2 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 486321 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91211-91899 bp 2 Locus 2: 295346-295969 bp Zoom in on locus 1 x11 Zoom in on locus 2 x10 CRISPR array Location: 91211-91899 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 91211-91899 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 295346-295969 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 295346-295969 bp Num of repeats: 10 Spacers: s11-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91211-91899 bp]: array | spacers
           [Locus range 295346-295969 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)