CRISPRone

CRISPRone report for GCA_900096245.1_ASM90009624v1

♦ Seq 1: FMKK01000017.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68431 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63671-64820 bp Zoom in on locus 1 x18 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63671-64820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKK01000002.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 511133 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132718-137648 bp 2 Locus 2: 228377-229133 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x12 CRISPR array Location: 132718-133603 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 132718-133603 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 135397-135620 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 135397-135620 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 137225-137648 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 137225-137648 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 228377-229133 bp Num of repeats: 12 Spacers: s23-s33 CRISPR array Location: 228377-229133 bp Num of repeats: 12 Spacers: s23-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132718-133603 bp]: array | spacers
           [Locus range 135397-135620 bp]: array | spacers
           [Locus range 137225-137648 bp]: array | spacers
           [Locus range 228377-229133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKK01000001.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 532047 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254107-264917 bp 2 Locus 2: 487094-487187 bp Zoom in on locus 1 x20 Zoom in on locus 2 x2 CRISPR array Location: 254107-255379 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 254107-255379 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 255563-255829 bp Gene: cd09722:cas1 Type: universal Location: 255832-256812 bp Gene: pfam01930:cas4 Type: Type-I Location: 256815-257333 bp Gene: COG1203:cas3 Type: Type-I Location: 257381-259702 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259713-260414 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260416-261330 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261332-263182 bp Gene: pfam01881:cas6 Type: other Location: 263188-263982 bp Gene: pfam13280:WYL Type: other Location: 264003-264917 bp CRISPR array Location: 487094-487187 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 487094-487187 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254107-255379 bp]: array | spacers
           [Locus range 487094-487187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKK01000004.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 373210 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44436-44794 bp 2 Locus 2: 118076-126397 bp 3 Locus 3: 289669-290286 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118076-119185 bp Gene: unk Type: unknown Location: 119619-119795 bp Gene: pfam01881:cas6 Type: other Location: 119896-120633 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120638-122113 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122133-123149 bp Gene: cd09693:cas5 Type: Type-I Location: 123165-123962 bp Gene: cd09641:cas3HD Type: Type-I Location: 123989-126397 bp CRISPR array Location: 289669-290286 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289669-290286 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44436-44794 bp]: array | spacers
           [Locus range 289669-290286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKK01000009.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 216848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125379-125938 bp Zoom in on locus 1 x9 CRISPR array Location: 125379-125938 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 125379-125938 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125379-125938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKK01000003.1 Clostridioides difficile isolate CD105HS42 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 404545 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117853-118013 bp Zoom in on locus 1 x3 CRISPR array Location: 117853-118013 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 117853-118013 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117853-118013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)