CRISPRone

CRISPRone report for GCA_900096255.1_ASM90009625v1

♦ Seq 1: FMKH01000001.1 Clostridioides difficile isolate CD105HS17 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1202458 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244681-245239 bp 2 Locus 2: 318486-326351 bp 3 Locus 3: 488319-489005 bp 4 Locus 4: 678507-690301 bp 5 Locus 5: 845756-845918 bp 6 Locus 6: 1163791-1164151 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x42 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244681-245239 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244681-245239 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318486-319595 bp Gene: pfam01881:cas6 Type: other Location: 319853-320590 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320595-322070 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322090-323103 bp Gene: cd09693:cas5 Type: Type-I Location: 323119-323916 bp Gene: cd09641:cas3HD Type: Type-I Location: 323943-326351 bp CRISPR array Location: 488319-489005 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 488319-489005 bp Num of repeats: 11 Spacers: s9-s18 Gene: cd09652:cas6 Type: other Location: 678507-679202 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679214-680953 bp Gene: pfam05107:cas7b Type: Type-I Location: 680946-681935 bp Gene: cd09693:cas5 Type: Type-I Location: 681937-682677 bp Gene: cd09641:cas3HD Type: Type-I Location: 682701-685259 bp CRISPR array Location: 685449-688189 bp Num of repeats: 42 Spacers: s19-s59 CRISPR array Location: 685449-688189 bp Num of repeats: 42 Spacers: s19-s59 Gene: pfam01930:cas4 Type: Type-I Location: 688273-688767 bp Gene: cd09722:cas1 Type: universal Location: 688793-689800 bp Gene: cd09725:cas2 Type: universal Location: 690011-690301 bp CRISPR array Location: 845756-845918 bp Num of repeats: 3 Spacers: s60-s61 CRISPR array Location: 845756-845918 bp Num of repeats: 3 Spacers: s60-s61 CRISPR array Location: 1163791-1164151 bp Num of repeats: 6 Spacers: s62-s66 CRISPR array Location: 1163791-1164151 bp Num of repeats: 6 Spacers: s62-s66 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244681-245239 bp]: array | spacers
           [Locus range 488319-489005 bp]: array | spacers
           [Locus range 685449-688189 bp]: array | spacers
           [Locus range 845756-845918 bp]: array | spacers
           [Locus range 1163791-1164151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKH01000003.1 Clostridioides difficile isolate CD105HS17 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 488872 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189131-189358 bp 2 Locus 2: 397500-397921 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 189131-189358 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 189131-189358 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 397500-397921 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 397500-397921 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189131-189358 bp]: array | spacers
           [Locus range 397500-397921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKH01000007.1 Clostridioides difficile isolate CD105HS17 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 155131 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135614-135840 bp Zoom in on locus 1 x4 CRISPR array Location: 135614-135840 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135614-135840 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135614-135840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)