CRISPRone

CRISPRone report for GCA_900096265.1_ASM90009626v1

♦ Seq 1: FMMK01000002.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 532424 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49292-49978 bp 2 Locus 2: 211944-220262 bp 3 Locus 3: 293547-293641 bp Zoom in on locus 1 x11 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 49292-49978 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 49292-49978 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09641:cas3HD Type: Type-I Location: 211944-214352 bp Gene: cd09693:cas5 Type: Type-I Location: 214379-215176 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 215192-216205 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 216225-217700 bp Gene: pfam01881:cas6 Type: other Location: 217705-218442 bp Gene: unk Type: unknown Location: 218543-218719 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 219153-220262 bp CRISPR array Location: 293547-293641 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 293547-293641 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 49292-49978 bp]: array | spacers
           [Locus range 293547-293641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMK01000008.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 209728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-91305 bp Zoom in on locus 1 x6 CRISPR array Location: 90949-91305 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 90949-91305 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-91305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMK01000012.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 139660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43505-43599 bp Zoom in on locus 1 x2 CRISPR array Location: 43505-43599 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43505-43599 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43505-43599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMK01000005.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 244219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152313-152538 bp Zoom in on locus 1 x4 CRISPR array Location: 152313-152538 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 152313-152538 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 152313-152538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMK01000010.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 190085 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171440-171930 bp Zoom in on locus 1 x8 CRISPR array Location: 171440-171930 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 171440-171930 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171440-171930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMK01000001.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 643620 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3474-4751 bp Zoom in on locus 1 x20 CRISPR array Location: 3474-4751 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 3474-4751 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3474-4751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMMK01000003.1 Clostridioides difficile isolate CD105LC8 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 320395 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56626-67709 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 56626-57513 bp Gene: pfam01881:cas6 Type: other Location: 57591-58328 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 58334-60211 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 60213-61127 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 61129-61830 bp Gene: cd09641:cas3HD Type: Type-I Location: 61841-64162 bp Gene: pfam01930:cas4 Type: Type-I Location: 64177-64728 bp Gene: cd09722:cas1 Type: universal Location: 64731-65711 bp Gene: cd09725:cas2 Type: universal Location: 65714-65980 bp CRISPR array Location: 66164-67709 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 66164-67709 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 66164-67709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)