CRISPRone

CRISPRone report for GCA_900096275.1_ASM90009627v1

♦ Seq 1: FMLL01000004.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 219855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29825-30185 bp Zoom in on locus 1 x6 CRISPR array Location: 29825-30185 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 29825-30185 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29825-30185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLL01000016.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 67542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63658-64081 bp Zoom in on locus 1 x7 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63658-64081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLL01000001.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 876556 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286782-297914 bp 2 Locus 2: 511195-511288 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 286782-288376 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 286782-288376 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 288560-288826 bp Gene: cd09722:cas1 Type: universal Location: 288829-289809 bp Gene: pfam01930:cas4 Type: Type-I Location: 289812-290330 bp Gene: cd09641:cas3HD Type: Type-I Location: 290378-292699 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 292710-293411 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 293413-294327 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 294329-296179 bp Gene: pfam01881:cas6 Type: other Location: 296185-296979 bp Gene: pfam13280:WYL Type: other Location: 297000-297914 bp CRISPR array Location: 511195-511288 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 511195-511288 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 286782-288376 bp]: array | spacers
           [Locus range 511195-511288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLL01000006.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 191017 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172481-173035 bp Zoom in on locus 1 x9 CRISPR array Location: 172481-173035 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 172481-173035 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172481-173035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLL01000005.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 216528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124768-125524 bp Zoom in on locus 1 x12 CRISPR array Location: 124768-125524 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 124768-125524 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124768-125524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLL01000002.1 Clostridioides difficile isolate CD105HS19 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 650947 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12053-12411 bp 2 Locus 2: 360690-361175 bp 3 Locus 3: 524558-532879 bp 4 Locus 4: 606226-606319 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 12053-12411 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12053-12411 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 360690-361175 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 360690-361175 bp Num of repeats: 8 Spacers: s6-s12 Gene: cd09641:cas3HD Type: Type-I Location: 524558-526966 bp Gene: cd09693:cas5 Type: Type-I Location: 526993-527790 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 527806-528822 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 528842-530317 bp Gene: pfam01881:cas6 Type: other Location: 530322-531059 bp Gene: unk Type: unknown Location: 531160-531336 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 531770-532879 bp CRISPR array Location: 606226-606319 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 606226-606319 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12053-12411 bp]: array | spacers
           [Locus range 360690-361175 bp]: array | spacers
           [Locus range 606226-606319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)