CRISPRone

CRISPRone report for GCA_900096285.1_ASM90009628v1

♦ Seq 1: FMMF01000003.1 Clostridioides difficile isolate CD105LC7 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258808 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98241-109194 bp 2 Locus 2: 161797-170124 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98241-98747 bp Gene: unk Type: unknown Location: 98906-99574 bp Gene: unk Type: unknown Location: 99987-100493 bp Gene: cd06127:DEDDh Type: Type-I Location: 100857-101894 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108709-109194 bp Gene: cd09641:cas3HD Type: Type-I Location: 161797-164205 bp Gene: cd09693:cas5 Type: Type-I Location: 164232-165029 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165045-166058 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166077-167543 bp Gene: pfam01881:cas6 Type: other Location: 167548-168285 bp Gene: unk Type: unknown Location: 168386-168562 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169015-170124 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMF01000002.1 Clostridioides difficile isolate CD105LC7 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295281 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104069-104695 bp Zoom in on locus 1 x10 CRISPR array Location: 104069-104695 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104069-104695 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104069-104695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMF01000020.1 Clostridioides difficile isolate CD105LC7 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76086 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73293-74441 bp Zoom in on locus 1 x18 CRISPR array Location: 73293-74441 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73293-74441 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73293-74441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMF01000001.1 Clostridioides difficile isolate CD105LC7 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 482741 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67400-78987 bp 2 Locus 2: 186939-187753 bp 3 Locus 3: 243165-255476 bp Zoom in on locus 1 x39 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67400-68095 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68107-69846 bp Gene: pfam05107:cas7b Type: Type-I Location: 69839-70828 bp Gene: cd09693:cas5 Type: Type-I Location: 70830-71570 bp Gene: cd09641:cas3HD Type: Type-I Location: 71594-74152 bp CRISPR array Location: 74342-76875 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74342-76875 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 76959-77453 bp Gene: cd09722:cas1 Type: universal Location: 77479-78486 bp Gene: cd09725:cas2 Type: universal Location: 78697-78987 bp CRISPR array Location: 186939-187753 bp Num of repeats: 13 Spacers: s39-s50 CRISPR array Location: 186939-187753 bp Num of repeats: 13 Spacers: s39-s50 Gene: COG0640:csa3 Type: Subtype-I-A Location: 243165-243542 bp Gene: cd09718:cas1 Type: universal Location: 243554-245209 bp CRISPR array Location: 252611-255476 bp Num of repeats: 44 Spacers: s51-s93 CRISPR array Location: 252611-255476 bp Num of repeats: 44 Spacers: s51-s93 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74342-76875 bp]: array | spacers
           [Locus range 186939-187753 bp]: array | spacers
           [Locus range 252611-255476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMF01000011.1 Clostridioides difficile isolate CD105LC7 genome assembly, contig: contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)