CRISPRone

CRISPRone report for GCA_900096305.1_ASM90009630v1

♦ Seq 1: FMLJ01000024.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000024, whole genome shotgun sequence

⇒Summary: seq-len = 19701 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7689-12620 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 7689-8113 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7689-8113 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 9717-9941 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 9717-9941 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 11734-12620 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 11734-12620 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7689-8113 bp]: array | spacers
           [Locus range 9717-9941 bp]: array | spacers
           [Locus range 11734-12620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLJ01000007.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90954-91512 bp Zoom in on locus 1 x9 CRISPR array Location: 90954-91512 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90954-91512 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90954-91512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLJ01000001.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 609728 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331577-342714 bp 2 Locus 2: 564918-565011 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 331577-333176 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 331577-333176 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 333360-333626 bp Gene: cd09722:cas1 Type: universal Location: 333629-334609 bp Gene: pfam01930:cas4 Type: Type-I Location: 334612-335130 bp Gene: COG1203:cas3 Type: Type-I Location: 335178-337499 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 337510-338211 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 338213-339127 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 339129-340979 bp Gene: pfam01881:cas6 Type: other Location: 340985-341779 bp Gene: pfam13280:WYL Type: other Location: 341800-342714 bp CRISPR array Location: 564918-565011 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 564918-565011 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 331577-333176 bp]: array | spacers
           [Locus range 564918-565011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLJ01000017.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 96686 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77982-78738 bp Zoom in on locus 1 x12 CRISPR array Location: 77982-78738 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77982-78738 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77982-78738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLJ01000003.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370597 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44107-44465 bp 2 Locus 2: 117747-126068 bp 3 Locus 3: 289359-289976 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44107-44465 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44107-44465 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117747-118856 bp Gene: unk Type: unknown Location: 119290-119466 bp Gene: pfam01881:cas6 Type: other Location: 119567-120304 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120309-121784 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121804-122820 bp Gene: cd09693:cas5 Type: Type-I Location: 122836-123633 bp Gene: cd09641:cas3HD Type: Type-I Location: 123660-126068 bp CRISPR array Location: 289359-289976 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289359-289976 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44107-44465 bp]: array | spacers
           [Locus range 289359-289976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLJ01000019.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63671-64820 bp Zoom in on locus 1 x18 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63671-64820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLJ01000002.1 Clostridioides difficile isolate CD105HS22 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 411392 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110267-110427 bp Zoom in on locus 1 x3 CRISPR array Location: 110267-110427 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110267-110427 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110267-110427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)