CRISPRone

CRISPRone report for GCA_900096315.1_ASM90009631v1

♦ Seq 1: FMLH01000003.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 279448 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193051-193412 bp Zoom in on locus 1 x6 CRISPR array Location: 193051-193412 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 193051-193412 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 193051-193412 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLH01000007.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 190121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171585-172139 bp Zoom in on locus 1 x9 CRISPR array Location: 171585-172139 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 171585-172139 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171585-172139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLH01000006.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 216507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90985-91740 bp Zoom in on locus 1 x12 CRISPR array Location: 90985-91740 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 90985-91740 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90985-91740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLH01000002.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 651107 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12048-12406 bp 2 Locus 2: 360927-361412 bp 3 Locus 3: 524713-533034 bp 4 Locus 4: 606386-606479 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 12048-12406 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12048-12406 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 360927-361412 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 360927-361412 bp Num of repeats: 8 Spacers: s6-s12 Gene: cd09641:cas3HD Type: Type-I Location: 524713-527121 bp Gene: cd09693:cas5 Type: Type-I Location: 527148-527945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 527961-528977 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 528997-530472 bp Gene: pfam01881:cas6 Type: other Location: 530477-531214 bp Gene: unk Type: unknown Location: 531315-531491 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 531925-533034 bp CRISPR array Location: 606386-606479 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 606386-606479 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12048-12406 bp]: array | spacers
           [Locus range 360927-361412 bp]: array | spacers
           [Locus range 606386-606479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLH01000017.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 67559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63658-64081 bp Zoom in on locus 1 x7 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63658-64081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLH01000001.1 Clostridioides difficile isolate CD105HS18 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 888871 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299149-310281 bp 2 Locus 2: 523490-523583 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 299149-300743 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 299149-300743 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 300927-301193 bp Gene: cd09722:cas1 Type: universal Location: 301196-302176 bp Gene: pfam01930:cas4 Type: Type-I Location: 302179-302697 bp Gene: cd09641:cas3HD Type: Type-I Location: 302745-305066 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 305077-305778 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 305780-306694 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 306696-308546 bp Gene: pfam01881:cas6 Type: other Location: 308552-309346 bp Gene: pfam13280:WYL Type: other Location: 309367-310281 bp CRISPR array Location: 523490-523583 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 523490-523583 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 299149-300743 bp]: array | spacers
           [Locus range 523490-523583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)