CRISPRone

CRISPRone report for GCA_900096325.1_ASM90009632v1

♦ Seq 1: FMKJ01000004.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 526178 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139586-140013 bp 2 Locus 2: 343547-343969 bp 3 Locus 3: 460291-461050 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 139586-140013 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 139586-140013 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 343547-343969 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 343547-343969 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 460291-461050 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 460291-461050 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139586-140013 bp]: array | spacers
           [Locus range 343547-343969 bp]: array | spacers
           [Locus range 460291-461050 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKJ01000002.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 619527 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89611-89837 bp Zoom in on locus 1 x4 CRISPR array Location: 89611-89837 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 89611-89837 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89611-89837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKJ01000003.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 542874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498757-498850 bp Zoom in on locus 1 x2 CRISPR array Location: 498757-498850 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498757-498850 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498757-498850 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKJ01000001.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 705473 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205280-205837 bp 2 Locus 2: 280057-287922 bp 3 Locus 3: 453679-453906 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 205280-205837 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 205280-205837 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 280057-281166 bp Gene: pfam01881:cas6 Type: other Location: 281424-282161 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 282166-283641 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 283661-284674 bp Gene: cd09693:cas5 Type: Type-I Location: 284690-285487 bp Gene: cd09641:cas3HD Type: Type-I Location: 285514-287922 bp CRISPR array Location: 453679-453906 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 453679-453906 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205280-205837 bp]: array | spacers
           [Locus range 453679-453906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKJ01000005.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 370115 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60853-62593 bp Zoom in on locus 1 x27 CRISPR array Location: 60853-62593 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 60853-62593 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60853-62593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKJ01000023.1 Clostridioides difficile isolate CD105HS14 genome assembly, contig: contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 18841 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6582-8557 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 6582-7137 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6582-7137 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7739-8557 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 7739-8557 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6582-7137 bp]: array | spacers
           [Locus range 7739-8557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)