CRISPRone

CRISPRone report for GCA_900096345.1_ASM90009634v1

♦ Seq 1: FMLK01000004.1 Clostridioides difficile isolate CD105HS25 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 423862 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248085-258198 bp Zoom in on locus 1 x9 CRISPR array Location: 248085-248633 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248085-248633 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 248817-249083 bp Gene: cd09722:cas1 Type: universal Location: 249086-250066 bp Gene: pfam01930:cas4 Type: Type-I Location: 250150-250587 bp Gene: COG1203:cas3 Type: Type-I Location: 250635-252956 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 252967-253668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253670-254584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254586-256463 bp Gene: pfam01881:cas6 Type: other Location: 256469-257263 bp Gene: pfam13280:WYL Type: other Location: 257284-258198 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248085-248633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLK01000008.1 Clostridioides difficile isolate CD105HS25 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 206548 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91030-91978 bp Zoom in on locus 1 x15 CRISPR array Location: 91030-91978 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 91030-91978 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91030-91978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLK01000002.1 Clostridioides difficile isolate CD105HS25 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 591105 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98777-99198 bp 2 Locus 2: 264724-272589 bp 3 Locus 3: 345947-346442 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 98777-99198 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 98777-99198 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 264724-267132 bp Gene: cd09693:cas5 Type: Type-I Location: 267159-267956 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 267972-268985 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 269005-270480 bp Gene: pfam01881:cas6 Type: other Location: 270485-271222 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 271480-272589 bp CRISPR array Location: 345947-346442 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 345947-346442 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98777-99198 bp]: array | spacers
           [Locus range 345947-346442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLK01000001.1 Clostridioides difficile isolate CD105HS25 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 765585 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19262-19754 bp 2 Locus 2: 193394-194607 bp Zoom in on locus 1 x8 Zoom in on locus 2 x19 CRISPR array Location: 19262-19754 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 19262-19754 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 193394-194607 bp Num of repeats: 19 Spacers: s8-s25 CRISPR array Location: 193394-194607 bp Num of repeats: 19 Spacers: s8-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19262-19754 bp]: array | spacers
           [Locus range 193394-194607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)