CRISPRone

CRISPRone report for GCA_900096355.1_ASM90009635v1

♦ Seq 1: FMLI01000020.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68319 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63671-64820 bp Zoom in on locus 1 x18 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63671-64820 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63671-64820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLI01000002.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370963 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44436-44794 bp 2 Locus 2: 118076-126397 bp 3 Locus 3: 289700-290317 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118076-119185 bp Gene: unk Type: unknown Location: 119619-119795 bp Gene: pfam01881:cas6 Type: other Location: 119896-120633 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120638-122113 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122133-123149 bp Gene: cd09693:cas5 Type: Type-I Location: 123165-123962 bp Gene: cd09641:cas3HD Type: Type-I Location: 123989-126397 bp CRISPR array Location: 289700-290317 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289700-290317 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44436-44794 bp]: array | spacers
           [Locus range 289700-290317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLI01000001.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 531000 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44874-44968 bp 2 Locus 2: 267234-278345 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44874-44968 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44874-44968 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267234-268121 bp Gene: pfam01881:cas6 Type: other Location: 268199-268936 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268942-270792 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270794-271708 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271710-272411 bp Gene: COG1203:cas3 Type: Type-I Location: 272422-274743 bp Gene: pfam01930:cas4 Type: Type-I Location: 274758-275309 bp Gene: cd09722:cas1 Type: universal Location: 275312-276292 bp Gene: cd09725:cas2 Type: universal Location: 276295-276561 bp CRISPR array Location: 276745-278345 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276745-278345 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44874-44968 bp]: array | spacers
           [Locus range 276745-278345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLI01000008.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 202365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91813-91974 bp Zoom in on locus 1 x3 CRISPR array Location: 91813-91974 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91813-91974 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91813-91974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLI01000006.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 216217 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124748-125307 bp Zoom in on locus 1 x9 CRISPR array Location: 124748-125307 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124748-125307 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124748-125307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLI01000027.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 18681 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5552-10483 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 5552-5976 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5552-5976 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7580-7804 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 7580-7804 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 9597-10483 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 9597-10483 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5552-5976 bp]: array | spacers
           [Locus range 7580-7804 bp]: array | spacers
           [Locus range 9597-10483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLI01000017.1 Clostridioides difficile isolate CD105HS6 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 97152 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18410-19167 bp Zoom in on locus 1 x12 CRISPR array Location: 18410-19167 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18410-19167 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18410-19167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)