CRISPRone

CRISPRone report for GCA_900096365.1_ASM90009636v1

♦ Seq 1: FMLS01000003.1 Clostridioides difficile isolate CD105LC9 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 294132 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189293-190051 bp Zoom in on locus 1 x12 CRISPR array Location: 189293-190051 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 189293-190051 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189293-190051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLS01000010.1 Clostridioides difficile isolate CD105LC9 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147183 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125794-137368 bp Zoom in on locus 1 x31 CRISPR array Location: 125794-127791 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 125794-127791 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 127975-128241 bp Gene: cd09722:cas1 Type: universal Location: 128244-129224 bp Gene: pfam01930:cas4 Type: Type-I Location: 129227-129745 bp Gene: COG1203:cas3 Type: Type-I Location: 129793-132114 bp Gene: cd09693:cas5 Type: Type-I Location: 132125-132826 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132828-133742 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133744-135594 bp Gene: pfam01881:cas6 Type: other Location: 135600-136337 bp Gene: pfam13280:WYL Type: other Location: 136415-137368 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125794-127791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLS01000001.1 Clostridioides difficile isolate CD105LC9 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 465827 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp 2 Locus 2: 187016-188028 bp 3 Locus 3: 225530-238570 bp Zoom in on locus 1 x40 Zoom in on locus 2 x16 Zoom in on locus 3 x55 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77547-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp CRISPR array Location: 187016-188028 bp Num of repeats: 16 Spacers: s40-s54 CRISPR array Location: 187016-188028 bp Num of repeats: 16 Spacers: s40-s54 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225530-225907 bp Gene: cd09718:cas1 Type: universal Location: 225919-227574 bp CRISPR array Location: 234976-238570 bp Num of repeats: 55 Spacers: s55-s108 CRISPR array Location: 234976-238570 bp Num of repeats: 55 Spacers: s55-s108 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers
           [Locus range 187016-188028 bp]: array | spacers
           [Locus range 234976-238570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLS01000019.1 Clostridioides difficile isolate CD105LC9 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76640 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-75039 bp Zoom in on locus 1 x27 CRISPR array Location: 73295-75039 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 73295-75039 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-75039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLS01000004.1 Clostridioides difficile isolate CD105LC9 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258805 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98243-109196 bp 2 Locus 2: 161799-170126 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98243-98749 bp Gene: unk Type: unknown Location: 98908-99576 bp Gene: unk Type: unknown Location: 99989-100495 bp Gene: cd06127:DEDDh Type: Type-I Location: 100859-101896 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108711-109196 bp Gene: cd09641:cas3HD Type: Type-I Location: 161799-164207 bp Gene: cd09693:cas5 Type: Type-I Location: 164234-165031 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165047-166060 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166079-167545 bp Gene: pfam01881:cas6 Type: other Location: 167550-168287 bp Gene: unk Type: unknown Location: 168388-168564 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169017-170126 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)