CRISPRone

CRISPRone report for GCA_900096375.1_ASM90009637v1

♦ Seq 1: FMMI01000020.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73313-74461 bp Zoom in on locus 1 x18 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73313-74461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMI01000002.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 258500 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMI01000004.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 219007 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31217-32030 bp 2 Locus 2: 140019-151606 bp Zoom in on locus 1 x13 Zoom in on locus 2 x39 CRISPR array Location: 31217-32030 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 31217-32030 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 140019-140309 bp Gene: cd09722:cas1 Type: universal Location: 140520-141527 bp Gene: pfam01930:cas4 Type: Type-I Location: 141553-142047 bp CRISPR array Location: 142132-144664 bp Num of repeats: 39 Spacers: s13-s50 CRISPR array Location: 142132-144664 bp Num of repeats: 39 Spacers: s13-s50 Gene: unk Type: unknown Location: 142755-142883 bp Gene: cd09641:cas3HD Type: Type-I Location: 144854-147412 bp Gene: cd09693:cas5 Type: Type-I Location: 147436-148176 bp Gene: pfam05107:cas7b Type: Type-I Location: 148178-149167 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 149160-150899 bp Gene: cd09652:cas6 Type: other Location: 150911-151606 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31217-32030 bp]: array | spacers
           [Locus range 142132-144664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMI01000003.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 246024 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227258-239568 bp Zoom in on locus 1 x44 CRISPR array Location: 227258-230122 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227258-230122 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237524-239179 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239191-239568 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227258-230122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMI01000001.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMI01000010.1 Clostridioides difficile isolate CD105LC10 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)