CRISPRone

CRISPRone report for GCA_900096385.1_ASM90009638v1

♦ Seq 1: FMLQ01000024.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000024, whole genome shotgun sequence

⇒Summary: seq-len = 14056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5599-5869 bp Zoom in on locus 1 x5 CRISPR array Location: 5599-5869 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5599-5869 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5599-5869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLQ01000002.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 551215 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248004-260162 bp Zoom in on locus 1 x40 CRISPR array Location: 248004-250597 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 248004-250597 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09725:cas2 Type: universal Location: 250781-251047 bp Gene: cd09722:cas1 Type: universal Location: 251050-252030 bp Gene: pfam01930:cas4 Type: Type-I Location: 252033-252551 bp Gene: COG1203:cas3 Type: Type-I Location: 252599-254920 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 254931-255632 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255634-256548 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256550-258427 bp Gene: pfam01881:cas6 Type: other Location: 258433-259227 bp Gene: pfam13280:WYL Type: other Location: 259248-260162 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248004-250597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLQ01000009.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 192895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63006-64092 bp Zoom in on locus 1 x17 CRISPR array Location: 63006-64092 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63006-64092 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63006-64092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLQ01000001.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 747905 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244833-245329 bp 2 Locus 2: 318611-326467 bp 3 Locus 3: 491367-491789 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 244833-245329 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244833-245329 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318611-319720 bp Gene: pfam01881:cas6 Type: other Location: 319978-320715 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320720-322186 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322206-323219 bp Gene: cd09693:cas5 Type: Type-I Location: 323235-324032 bp Gene: cd09641:cas3HD Type: Type-I Location: 324059-326467 bp CRISPR array Location: 491367-491789 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 491367-491789 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244833-245329 bp]: array | spacers
           [Locus range 491367-491789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLQ01000015.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 99258 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81251-81545 bp Zoom in on locus 1 x5 CRISPR array Location: 81251-81545 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 81251-81545 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81251-81545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLQ01000004.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 368219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102550-102708 bp Zoom in on locus 1 x3 CRISPR array Location: 102550-102708 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102550-102708 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102550-102708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLQ01000008.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 215417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124272-124499 bp Zoom in on locus 1 x4 CRISPR array Location: 124272-124499 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 124272-124499 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124272-124499 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMLQ01000005.1 Clostridioides difficile isolate CD105LC13 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 318660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190316-191599 bp Zoom in on locus 1 x20 CRISPR array Location: 190316-191599 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 190316-191599 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190316-191599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)