CRISPRone

CRISPRone report for GCA_900096395.1_ASM90009639v1

♦ Seq 1: FMLX01000020.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 20421 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10177-12151 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 10177-10994 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 10177-10994 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 11597-12151 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 11597-12151 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10177-10994 bp]: array | spacers
           [Locus range 11597-12151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLX01000008.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 230679 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140426-140651 bp Zoom in on locus 1 x4 CRISPR array Location: 140426-140651 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140426-140651 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140426-140651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLX01000004.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 350148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141634-143374 bp Zoom in on locus 1 x27 CRISPR array Location: 141634-143374 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 141634-143374 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 141634-143374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLX01000003.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 524522 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138369-138663 bp 2 Locus 2: 342197-342619 bp 3 Locus 3: 458967-459396 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 138369-138663 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 138369-138663 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 342197-342619 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 342197-342619 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 458967-459396 bp Num of repeats: 7 Spacers: s11-s16 CRISPR array Location: 458967-459396 bp Num of repeats: 7 Spacers: s11-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138369-138663 bp]: array | spacers
           [Locus range 342197-342619 bp]: array | spacers
           [Locus range 458967-459396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLX01000001.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 705399 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250237-250463 bp 2 Locus 2: 416220-424085 bp 3 Locus 3: 498355-498911 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 250237-250463 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 250237-250463 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 416220-418628 bp Gene: cd09693:cas5 Type: Type-I Location: 418655-419452 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 419468-420481 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 420501-421976 bp Gene: pfam01881:cas6 Type: other Location: 421981-422718 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 422976-424085 bp CRISPR array Location: 498355-498911 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 498355-498911 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250237-250463 bp]: array | spacers
           [Locus range 498355-498911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLX01000002.1 Clostridioides difficile isolate CD105LC11 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 577368 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44148-44242 bp Zoom in on locus 1 x2 CRISPR array Location: 44148-44242 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44148-44242 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44148-44242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)