CRISPRone

CRISPRone report for GCA_900096415.1_ASM90009641v1

♦ Seq 1: FMME01000013.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 117081 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19035-19725 bp 2 Locus 2: 109723-111045 bp Zoom in on locus 1 x11 Zoom in on locus 2 x6 x6 CRISPR array Location: 19035-19725 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 19035-19725 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 109723-110084 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 109723-110084 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 110686-111045 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 110686-111045 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19035-19725 bp]: array | spacers
           [Locus range 109723-110084 bp]: array | spacers
           [Locus range 110686-111045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMME01000005.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 278639 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87595-88278 bp Zoom in on locus 1 x11 CRISPR array Location: 87595-88278 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 87595-88278 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87595-88278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMME01000003.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 363955 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3508-4717 bp 2 Locus 2: 322476-322570 bp Zoom in on locus 1 x19 Zoom in on locus 2 x2 CRISPR array Location: 3508-4717 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3508-4717 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 322476-322570 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 322476-322570 bp Num of repeats: 2 Spacers: s19-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3508-4717 bp]: array | spacers
           [Locus range 322476-322570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMME01000008.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 200378 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108509-109396 bp Zoom in on locus 1 x14 CRISPR array Location: 108509-109396 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 108509-109396 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108509-109396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMME01000001.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 843979 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 349323-350076 bp 2 Locus 2: 515586-523451 bp 3 Locus 3: 596722-596815 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 349323-350076 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 349323-350076 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 515586-517994 bp Gene: cd09693:cas5 Type: Type-I Location: 518021-518818 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 518834-519847 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 519867-521342 bp Gene: pfam01881:cas6 Type: other Location: 521347-522084 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 522342-523451 bp CRISPR array Location: 596722-596815 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 596722-596815 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 349323-350076 bp]: array | spacers
           [Locus range 596722-596815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMME01000002.1 Clostridioides difficile isolate CD105LC12 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 543339 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252762-263705 bp 2 Locus 2: 486903-494384 bp Zoom in on locus 1 x22 Zoom in on locus 2 x20 CRISPR array Location: 252762-254167 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 252762-254167 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 254351-254617 bp Gene: cd09722:cas1 Type: universal Location: 254620-255600 bp Gene: pfam01930:cas4 Type: Type-I Location: 255603-256121 bp Gene: COG1203:cas3 Type: Type-I Location: 256169-258490 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258501-259202 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259204-260118 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260120-261970 bp Gene: pfam01881:cas6 Type: other Location: 261976-262770 bp Gene: pfam13280:WYL Type: other Location: 262791-263705 bp CRISPR array Location: 486903-488181 bp Num of repeats: 20 Spacers: s22-s40 CRISPR array Location: 486903-488181 bp Num of repeats: 20 Spacers: s22-s40 Gene: COG1203:cas3 Type: Type-I Location: 488748-490730 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 490741-491811 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 491832-492980 bp Gene: pfam01881:cas6 Type: other Location: 492982-493746 bp Gene: cd09693:cas5 Type: Type-I Location: 493737-494384 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252762-254167 bp]: array | spacers
           [Locus range 486903-488181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)