CRISPRone

CRISPRone report for GCA_900096425.1_ASM90009642v1

♦ Seq 1: FMMC01000001.1 Clostridioides difficile isolate CD105LC16 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1208451 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64753-65114 bp 2 Locus 2: 359000-359161 bp 3 Locus 3: 514692-526617 bp 4 Locus 4: 716120-716805 bp 5 Locus 5: 878773-886638 bp 6 Locus 6: 959886-960443 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x44 Zoom in on locus 4 x11 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 64753-65114 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 64753-65114 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 359000-359161 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 359000-359161 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 514692-514982 bp Gene: cd09722:cas1 Type: universal Location: 515193-516200 bp Gene: pfam01930:cas4 Type: Type-I Location: 516226-516720 bp CRISPR array Location: 516805-519675 bp Num of repeats: 44 Spacers: s8-s50 CRISPR array Location: 516805-519675 bp Num of repeats: 44 Spacers: s8-s50 Gene: cd09641:cas3HD Type: Type-I Location: 519865-522423 bp Gene: cd09693:cas5 Type: Type-I Location: 522447-523187 bp Gene: pfam05107:cas7b Type: Type-I Location: 523189-524178 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 524171-525910 bp Gene: cd09652:cas6 Type: other Location: 525922-526617 bp CRISPR array Location: 716120-716805 bp Num of repeats: 11 Spacers: s51-s60 CRISPR array Location: 716120-716805 bp Num of repeats: 11 Spacers: s51-s60 Gene: cd09641:cas3HD Type: Type-I Location: 878773-881181 bp Gene: cd09693:cas5 Type: Type-I Location: 881208-882005 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 882021-883034 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 883054-884529 bp Gene: pfam01881:cas6 Type: other Location: 884534-885271 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 885529-886638 bp CRISPR array Location: 959886-960443 bp Num of repeats: 9 Spacers: s61-s68 CRISPR array Location: 959886-960443 bp Num of repeats: 9 Spacers: s61-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64753-65114 bp]: array | spacers
           [Locus range 359000-359161 bp]: array | spacers
           [Locus range 516805-519675 bp]: array | spacers
           [Locus range 716120-716805 bp]: array | spacers
           [Locus range 959886-960443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMC01000002.1 Clostridioides difficile isolate CD105LC16 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 644604 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135734-135960 bp 2 Locus 2: 246298-246718 bp 3 Locus 3: 454861-455087 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 135734-135960 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135734-135960 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246298-246718 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246298-246718 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 454861-455087 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 454861-455087 bp Num of repeats: 4 Spacers: s10-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135734-135960 bp]: array | spacers
           [Locus range 246298-246718 bp]: array | spacers
           [Locus range 454861-455087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)