CRISPRone

CRISPRone report for GCA_900096435.1_ASM90009643v1

♦ Seq 1: FMMJ01000007.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 229779 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122138-122492 bp 2 Locus 2: 143332-143493 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 CRISPR array Location: 122138-122492 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 122138-122492 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 143332-143493 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 143332-143493 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122138-122492 bp]: array | spacers
           [Locus range 143332-143493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMJ01000005.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 247526 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18298-19055 bp 2 Locus 2: 109783-114714 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x14 CRISPR array Location: 18298-19055 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18298-19055 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109783-110207 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109783-110207 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 111811-112035 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 111811-112035 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 113828-114714 bp Num of repeats: 14 Spacers: s21-s33 CRISPR array Location: 113828-114714 bp Num of repeats: 14 Spacers: s21-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18298-19055 bp]: array | spacers
           [Locus range 109783-110207 bp]: array | spacers
           [Locus range 111811-112035 bp]: array | spacers
           [Locus range 113828-114714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMJ01000003.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 320226 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254101-265238 bp Zoom in on locus 1 x25 CRISPR array Location: 254101-255700 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 254101-255700 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 255884-256150 bp Gene: cd09722:cas1 Type: universal Location: 256153-257133 bp Gene: pfam01930:cas4 Type: Type-I Location: 257136-257654 bp Gene: COG1203:cas3 Type: Type-I Location: 257702-260023 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260034-260735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260737-261651 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261653-263503 bp Gene: pfam01881:cas6 Type: other Location: 263509-264303 bp Gene: pfam13280:WYL Type: other Location: 264324-265238 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254101-255700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMJ01000008.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90860-91351 bp Zoom in on locus 1 x8 CRISPR array Location: 90860-91351 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90860-91351 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90860-91351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMJ01000001.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 373209 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82925-83541 bp 2 Locus 2: 246813-255134 bp 3 Locus 3: 328417-328774 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 82925-83541 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 82925-83541 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 246813-249221 bp Gene: cd09693:cas5 Type: Type-I Location: 249248-250045 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250061-251077 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251097-252572 bp Gene: pfam01881:cas6 Type: other Location: 252577-253314 bp Gene: unk Type: unknown Location: 253415-253591 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254025-255134 bp CRISPR array Location: 328417-328774 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 328417-328774 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82925-83541 bp]: array | spacers
           [Locus range 328417-328774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMJ01000009.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 212325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44941-45035 bp Zoom in on locus 1 x2 CRISPR array Location: 44941-45035 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44941-45035 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44941-45035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMMJ01000019.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 64935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3608-4758 bp Zoom in on locus 1 x18 CRISPR array Location: 3608-4758 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3608-4758 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3608-4758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMMJ01000004.1 Clostridioides difficile isolate CD105LC15 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 277148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189905-191054 bp Zoom in on locus 1 x18 CRISPR array Location: 189905-191054 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 189905-191054 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189905-191054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)