CRISPRone

CRISPRone report for GCA_900096445.1_ASM90009644v1

♦ Seq 1: FMMB01000006.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 237924 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90887-91512 bp Zoom in on locus 1 x10 CRISPR array Location: 90887-91512 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 90887-91512 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90887-91512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMB01000005.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 258418 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63612-64949 bp 2 Locus 2: 238534-240210 bp Zoom in on locus 1 x21 Zoom in on locus 2 x26 CRISPR array Location: 63612-64949 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63612-64949 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 238534-240210 bp Num of repeats: 26 Spacers: s21-s45 CRISPR array Location: 238534-240210 bp Num of repeats: 26 Spacers: s21-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63612-64949 bp]: array | spacers
           [Locus range 238534-240210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMB01000009.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 150681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138170-139121 bp Zoom in on locus 1 x15 CRISPR array Location: 138170-139121 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 138170-139121 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138170-139121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMB01000002.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 476535 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191277-201304 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 191277-192164 bp Gene: pfam01881:cas6 Type: other Location: 192242-192979 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192985-194862 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194864-195778 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195780-196481 bp Gene: cd09641:cas3HD Type: Type-I Location: 196492-198813 bp Gene: pfam01930:cas4 Type: Type-I Location: 198828-199379 bp Gene: cd09722:cas1 Type: universal Location: 199382-200362 bp Gene: cd09725:cas2 Type: universal Location: 200365-200631 bp CRISPR array Location: 200815-201304 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 200815-201304 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200815-201304 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMB01000004.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 314475 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189947-190370 bp 2 Locus 2: 212680-215715 bp Zoom in on locus 1 x7 Zoom in on locus 2 x15 x4 x2 CRISPR array Location: 189947-190370 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 189947-190370 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 212680-213635 bp Num of repeats: 15 Spacers: s7-s20 CRISPR array Location: 212680-213635 bp Num of repeats: 15 Spacers: s7-s20 CRISPR array Location: 215250-215476 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 215250-215476 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 215620-215715 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 215620-215715 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189947-190370 bp]: array | spacers
           [Locus range 212680-213635 bp]: array | spacers
           [Locus range 215250-215476 bp]: array | spacers
           [Locus range 215620-215715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMB01000001.1 Clostridioides difficile isolate CD105LC20 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1112218 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239590-240086 bp 2 Locus 2: 313424-321770 bp 3 Locus 3: 485188-485936 bp 4 Locus 4: 858794-859085 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 239590-240086 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239590-240086 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313424-314533 bp Gene: unk Type: unknown Location: 314992-315168 bp Gene: pfam01881:cas6 Type: other Location: 315269-316006 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316011-317486 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317506-318522 bp Gene: cd09693:cas5 Type: Type-I Location: 318538-319335 bp Gene: cd09641:cas3HD Type: Type-I Location: 319362-321770 bp CRISPR array Location: 485188-485936 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 485188-485936 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 858794-859085 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 858794-859085 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239590-240086 bp]: array | spacers
           [Locus range 485188-485936 bp]: array | spacers
           [Locus range 858794-859085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)