CRISPRone

CRISPRone report for GCA_900096455.1_ASM90009645v1

♦ Seq 1: FMLR01000001.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 534589 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256171-267308 bp 2 Locus 2: 489643-489736 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 256171-257770 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 256171-257770 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 257954-258220 bp Gene: cd09722:cas1 Type: universal Location: 258223-259203 bp Gene: pfam01930:cas4 Type: Type-I Location: 259206-259724 bp Gene: COG1203:cas3 Type: Type-I Location: 259772-262093 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262104-262805 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262807-263721 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263723-265573 bp Gene: pfam01881:cas6 Type: other Location: 265579-266373 bp Gene: pfam13280:WYL Type: other Location: 266394-267308 bp CRISPR array Location: 489643-489736 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 489643-489736 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256171-257770 bp]: array | spacers
           [Locus range 489643-489736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLR01000005.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 247293 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132521-137385 bp 2 Locus 2: 228114-228870 bp Zoom in on locus 1 x13 x4 x7 Zoom in on locus 2 x12 CRISPR array Location: 132521-133340 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 132521-133340 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135134-135357 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 135134-135357 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 136962-137385 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 136962-137385 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 228114-228870 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 228114-228870 bp Num of repeats: 12 Spacers: s22-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132521-133340 bp]: array | spacers
           [Locus range 135134-135357 bp]: array | spacers
           [Locus range 136962-137385 bp]: array | spacers
           [Locus range 228114-228870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLR01000007.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90880-91438 bp Zoom in on locus 1 x9 CRISPR array Location: 90880-91438 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90880-91438 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90880-91438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLR01000003.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 374938 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289656-290273 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289656-290273 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289656-290273 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289656-290273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLR01000019.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68319 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3500-4650 bp Zoom in on locus 1 x18 CRISPR array Location: 3500-4650 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3500-4650 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3500-4650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLR01000002.1 Clostridioides difficile isolate CD105LC14 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 437941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110268-110428 bp Zoom in on locus 1 x3 CRISPR array Location: 110268-110428 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110268-110428 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110268-110428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)