CRISPRone

CRISPRone report for GCA_900096465.1_ASM90009646v1

♦ Seq 1: FMLO01000002.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354346 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12511-12605 bp 2 Locus 2: 54226-54851 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 12511-12605 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12511-12605 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 54226-54851 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 54226-54851 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12511-12605 bp]: array | spacers
           [Locus range 54226-54851 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLO01000003.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 350442 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183360-191235 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183360-184469 bp Gene: pfam01881:cas6 Type: other Location: 184728-185465 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185470-186945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186965-187978 bp Gene: cd09693:cas5 Type: Type-I Location: 187994-188800 bp Gene: cd09641:cas3HD Type: Type-I Location: 188827-191235 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLO01000011.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141000 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113403-124585 bp Zoom in on locus 1 x25 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114249-114482 bp Gene: unk Type: unknown Location: 114704-114871 bp Gene: cd09725:cas2 Type: universal Location: 115204-115470 bp Gene: cd09722:cas1 Type: universal Location: 115473-116453 bp Gene: pfam01930:cas4 Type: Type-I Location: 116456-116974 bp Gene: COG1203:cas3 Type: Type-I Location: 117022-119343 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119354-120055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120057-120971 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120973-122850 bp Gene: pfam01881:cas6 Type: other Location: 122856-123650 bp Gene: pfam13280:WYL Type: other Location: 123671-124585 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113403-115020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLO01000004.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 313968 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 800-1758 bp 2 Locus 2: 234866-235553 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 800-1758 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 800-1758 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 234866-235553 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 234866-235553 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 800-1758 bp]: array | spacers
           [Locus range 234866-235553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLO01000001.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 425181 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 349113-355646 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 349113-349760 bp Gene: pfam01881:cas6 Type: other Location: 349751-350515 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 350517-351683 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 351704-352774 bp Gene: COG1203:cas3 Type: Type-I Location: 352785-354770 bp CRISPR array Location: 355023-355646 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 355023-355646 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 355023-355646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLO01000008.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 166356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112308-113132 bp Zoom in on locus 1 x13 CRISPR array Location: 112308-113132 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112308-113132 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112308-113132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLO01000009.1 Clostridioides difficile isolate CD105LC18 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149091 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30689-30983 bp 2 Locus 2: 123366-125877 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123366-123723 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123366-123723 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125587-125877 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125587-125877 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30689-30983 bp]: array | spacers
           [Locus range 123366-123723 bp]: array | spacers
           [Locus range 125587-125877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)