CRISPRone

CRISPRone report for GCA_900096475.1_ASM90009647v1

♦ Seq 1: FMLZ01000004.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 340811 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26068-26754 bp 2 Locus 2: 216256-228181 bp Zoom in on locus 1 x11 Zoom in on locus 2 x44 CRISPR array Location: 26068-26754 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 26068-26754 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09652:cas6 Type: other Location: 216256-216951 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 216963-218702 bp Gene: pfam05107:cas7b Type: Type-I Location: 218695-219684 bp Gene: cd09693:cas5 Type: Type-I Location: 219686-220426 bp Gene: cd09641:cas3HD Type: Type-I Location: 220450-223008 bp CRISPR array Location: 223198-226069 bp Num of repeats: 44 Spacers: s11-s53 CRISPR array Location: 223198-226069 bp Num of repeats: 44 Spacers: s11-s53 Gene: pfam01930:cas4 Type: Type-I Location: 226153-226647 bp Gene: cd09722:cas1 Type: universal Location: 226673-227680 bp Gene: cd09725:cas2 Type: universal Location: 227891-228181 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26068-26754 bp]: array | spacers
           [Locus range 223198-226069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLZ01000003.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 457809 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59510-59930 bp 2 Locus 2: 268073-268299 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 CRISPR array Location: 59510-59930 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 59510-59930 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 268073-268299 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 268073-268299 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59510-59930 bp]: array | spacers
           [Locus range 268073-268299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLZ01000005.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 307713 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42803-42965 bp Zoom in on locus 1 x3 CRISPR array Location: 42803-42965 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 42803-42965 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42803-42965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLZ01000016.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 93305 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53075-53435 bp Zoom in on locus 1 x6 CRISPR array Location: 53075-53435 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53075-53435 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53075-53435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLZ01000008.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 155214 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19304-19531 bp Zoom in on locus 1 x4 CRISPR array Location: 19304-19531 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 19304-19531 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19304-19531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLZ01000002.1 Clostridioides difficile isolate CD105HS7 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 465642 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248011-248569 bp 2 Locus 2: 321816-329681 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 248011-248569 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248011-248569 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321816-322925 bp Gene: pfam01881:cas6 Type: other Location: 323183-323920 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323925-325400 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 325420-326433 bp Gene: cd09693:cas5 Type: Type-I Location: 326449-327246 bp Gene: cd09641:cas3HD Type: Type-I Location: 327273-329681 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248011-248569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)