CRISPRone

CRISPRone report for GCA_900106145.1_PSA12

♦ Seq 1: FNLT01000012.1 Pseudomonas aeruginosa isolate PSA-12 genome assembly, contig: PSA_12000012, whole genome shotgun sequence

⇒Summary: seq-len = 589544 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 282138-294176 bp Zoom in on locus 1 x18 x29 CRISPR array Location: 282138-283204 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 282138-283204 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 283978-286659 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 286662-288230 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 288227-288757 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 288767-289909 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 289911-290573 bp Gene: pfam08798:cas6e Type: other Location: 290548-291159 bp Gene: cd09719:cas1 Type: universal Location: 291186-292076 bp Gene: pfam09707:cas2 Type: universal Location: 292073-292372 bp CRISPR array Location: 292437-294176 bp Num of repeats: 29 Spacers: s18-s45 CRISPR array Location: 292437-294176 bp Num of repeats: 29 Spacers: s18-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 282138-283204 bp]: array | spacers
           [Locus range 292437-294176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)