CRISPRone

CRISPRone report for GCA_900106265.1_PSA13

♦ Seq 1: FNME01000031.1 Pseudomonas aeruginosa isolate PSA-13 genome assembly, contig: PSA_13000031, whole genome shotgun sequence

⇒Summary: seq-len = 195011 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112605-123190 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 112605-114149 bp Gene: unk Type: unknown Location: 115233-115412 bp Gene: pfam00078:RT Type: other Location: 116144-117412 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 122321-123190 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FNME01000018.1 Pseudomonas aeruginosa isolate PSA-13 genome assembly, contig: PSA_13000018, whole genome shotgun sequence

⇒Summary: seq-len = 97134 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33477-43741 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 33477-34405 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 33477-34405 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 34665-35639 bp Gene: COG1203:cas3 Type: Type-I Location: 35636-38866 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38924-40228 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40215-41198 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41209-42237 bp Gene: cd09739:cas6f Type: other Location: 42241-42804 bp CRISPR array Location: 43054-43741 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 43054-43741 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33477-34405 bp]: array | spacers
           [Locus range 43054-43741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)