CRISPRone

CRISPRone report for GCA_900143775.1_13

♦ Seq 1: FRFU01000090.1 Pseudomonas aeruginosa isolate 13 genome assembly, contig: 13.NODE_183_length_48417_cov_52.500610, whole genome shotgun sequence

⇒Summary: seq-len = 48465 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38144-48202 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 38144-38711 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38144-38711 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 38894-39457 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39461-40489 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40500-41483 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41470-42771 bp Gene: COG1203:cas3 Type: Type-I Location: 43182-46412 bp Gene: cd09718:cas1 Type: universal Location: 46409-47383 bp CRISPR array Location: 47635-48202 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 47635-48202 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38144-38711 bp]: array | spacers
           [Locus range 47635-48202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFU01000067.1 Pseudomonas aeruginosa isolate 13 genome assembly, contig: 13.NODE_102_length_209399_cov_55.306736, whole genome shotgun sequence

⇒Summary: seq-len = 209447 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-835 bp Zoom in on locus 1 x10 CRISPR array Location: 266-835 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 266-835 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266-835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRFU01000021.1 Pseudomonas aeruginosa isolate 13 genome assembly, contig: 13.NODE_28_length_156462_cov_59.146214, whole genome shotgun sequence

⇒Summary: seq-len = 156510 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15858-24598 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15858-16727 bp Gene: unk Type: unknown Location: 17068-17211 bp Gene: unk Type: unknown Location: 17386-19524 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 20085-21305 bp Gene: cd09639:cas3 Type: Type-I Location: 22232-24598 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)