CRISPRone

CRISPRone report for GCA_900143815.1_36

♦ Seq 1: FRGF01000038.1 Pseudomonas aeruginosa isolate 36 genome assembly, contig: 36.NODE_40_length_40518_cov_70.797028, whole genome shotgun sequence

⇒Summary: seq-len = 40574 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15866-21313 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15866-16735 bp Gene: unk Type: unknown Location: 17076-17288 bp Gene: unk Type: unknown Location: 17394-19532 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19532-21313 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGF01000083.1 Pseudomonas aeruginosa isolate 36 genome assembly, contig: 36.NODE_92_length_17913_cov_66.489029, whole genome shotgun sequence

⇒Summary: seq-len = 17969 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17128-17696 bp Zoom in on locus 1 x10 CRISPR array Location: 17128-17696 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17128-17696 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17128-17696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRGF01000081.1 Pseudomonas aeruginosa isolate 36 genome assembly, contig: 36.NODE_90_length_36096_cov_68.236588, whole genome shotgun sequence

⇒Summary: seq-len = 36152 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25823-35881 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 25823-26390 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25823-26390 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 26573-27136 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27140-28168 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28179-29162 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29149-30450 bp Gene: COG1203:cas3 Type: Type-I Location: 30861-34091 bp Gene: cd09718:cas1 Type: universal Location: 34088-35062 bp CRISPR array Location: 35314-35881 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 35314-35881 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25823-26390 bp]: array | spacers
           [Locus range 35314-35881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)