CRISPRone

CRISPRone report for GCA_900143825.1_66

♦ Seq 1: FRFJ01000096.1 Pseudomonas aeruginosa isolate 66 genome assembly, contig: 66.NODE_105_length_132277_cov_56.030701, whole genome shotgun sequence

⇒Summary: seq-len = 132329 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25843-37770 bp Zoom in on locus 1 x27 x24 CRISPR array Location: 25843-27428 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 25843-27428 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 27612-28175 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28179-29207 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29218-30201 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 30188-31489 bp Gene: COG1203:cas3 Type: Type-I Location: 31900-35130 bp Gene: cd09718:cas1 Type: universal Location: 35127-36101 bp CRISPR array Location: 36362-37770 bp Num of repeats: 24 Spacers: s27-s49 CRISPR array Location: 36362-37770 bp Num of repeats: 24 Spacers: s27-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25843-27428 bp]: array | spacers
           [Locus range 36362-37770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFJ01000139.1 Pseudomonas aeruginosa isolate 66 genome assembly, contig: 66.NODE_209_length_274848_cov_59.954784, whole genome shotgun sequence

⇒Summary: seq-len = 274900 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257423-258052 bp Zoom in on locus 1 x11 CRISPR array Location: 257423-258052 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 257423-258052 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 257423-258052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)