CRISPRone

CRISPRone report for GCA_900143835.1_22

♦ Seq 1: FRFW01000002.1 Pseudomonas aeruginosa isolate 22 genome assembly, contig: 22.NODE_2_length_546557_cov_64.126129, whole genome shotgun sequence

⇒Summary: seq-len = 546607 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120513-121620 bp Zoom in on locus 1 x19 CRISPR array Location: 120513-121620 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 120513-121620 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120513-121620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFW01000060.1 Pseudomonas aeruginosa isolate 22 genome assembly, contig: 22.NODE_67_length_130449_cov_62.768555, whole genome shotgun sequence

⇒Summary: seq-len = 130499 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42655-50052 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 42655-43557 bp Gene: unk Type: unknown Location: 43564-44352 bp Gene: COG4804:PD-DExK Type: other Location: 44398-45534 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 49597-50052 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRFW01000100.1 Pseudomonas aeruginosa isolate 22 genome assembly, contig: 22.NODE_162_length_49522_cov_59.984673, whole genome shotgun sequence

⇒Summary: seq-len = 49572 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37323-48890 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 37323-38187 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37323-38187 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38371-38934 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38938-39966 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39977-40960 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40947-42248 bp Gene: COG1203:cas3 Type: Type-I Location: 42659-45889 bp Gene: cd09718:cas1 Type: universal Location: 45886-46860 bp CRISPR array Location: 47121-48890 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 47121-48890 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37323-38187 bp]: array | spacers
           [Locus range 47121-48890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)