CRISPRone

CRISPRone report for GCA_900143875.1_65

♦ Seq 1: FRFK01000142.1 Pseudomonas aeruginosa isolate 65 genome assembly, contig: 65.NODE_237_length_50307_cov_64.849464, whole genome shotgun sequence

⇒Summary: seq-len = 50353 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38155-50082 bp Zoom in on locus 1 x27 x24 CRISPR array Location: 38155-39740 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38155-39740 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 39924-40487 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40491-41519 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41530-42513 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42500-43801 bp Gene: COG1203:cas3 Type: Type-I Location: 44212-47442 bp Gene: cd09718:cas1 Type: universal Location: 47439-48413 bp CRISPR array Location: 48674-50082 bp Num of repeats: 24 Spacers: s27-s49 CRISPR array Location: 48674-50082 bp Num of repeats: 24 Spacers: s27-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38155-39740 bp]: array | spacers
           [Locus range 48674-50082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFK01000083.1 Pseudomonas aeruginosa isolate 65 genome assembly, contig: 65.NODE_86_length_18178_cov_67.260147, whole genome shotgun sequence

⇒Summary: seq-len = 18224 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 737-1366 bp Zoom in on locus 1 x11 CRISPR array Location: 737-1366 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 737-1366 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 737-1366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)