CRISPRone

CRISPRone report for GCA_900143885.1_21

♦ Seq 1: FRFM01000118.1 Pseudomonas aeruginosa isolate 21 genome assembly, contig: 21.NODE_192_length_49526_cov_69.528877, whole genome shotgun sequence

⇒Summary: seq-len = 49578 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37325-48892 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 37325-38189 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37325-38189 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38373-38936 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38940-39968 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39979-40962 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40949-42250 bp Gene: COG1203:cas3 Type: Type-I Location: 42661-45891 bp Gene: cd09718:cas1 Type: universal Location: 45888-46862 bp CRISPR array Location: 47123-48892 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 47123-48892 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37325-38189 bp]: array | spacers
           [Locus range 47123-48892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFM01000047.1 Pseudomonas aeruginosa isolate 21 genome assembly, contig: 21.NODE_54_length_98157_cov_74.392441, whole genome shotgun sequence

⇒Summary: seq-len = 98209 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80410-87807 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80410-80865 bp Gene: COG4804:PD-DExK Type: other Location: 84928-86064 bp Gene: unk Type: unknown Location: 86110-86898 bp Gene: pfam13280:WYL Type: other Location: 86905-87807 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRFM01000022.1 Pseudomonas aeruginosa isolate 21 genome assembly, contig: 21.NODE_23_length_394891_cov_78.553963, whole genome shotgun sequence

⇒Summary: seq-len = 394943 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376921-378029 bp Zoom in on locus 1 x19 CRISPR array Location: 376921-378029 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 376921-378029 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 376921-378029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)