CRISPRone

CRISPRone report for GCA_900143895.1_60

♦ Seq 1: FRFP01000035.1 Pseudomonas aeruginosa isolate 60 genome assembly, contig: 60.NODE_35_length_65562_cov_70.349075, whole genome shotgun sequence

⇒Summary: seq-len = 65612 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53350-65337 bp Zoom in on locus 1 x27 x25 CRISPR array Location: 53350-54935 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 53350-54935 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 55119-55682 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55686-56714 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56725-57708 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57695-58996 bp Gene: COG1203:cas3 Type: Type-I Location: 59407-62637 bp Gene: cd09718:cas1 Type: universal Location: 62634-63608 bp CRISPR array Location: 63869-65337 bp Num of repeats: 25 Spacers: s27-s50 CRISPR array Location: 63869-65337 bp Num of repeats: 25 Spacers: s27-s50 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53350-54935 bp]: array | spacers
           [Locus range 63869-65337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFP01000095.1 Pseudomonas aeruginosa isolate 60 genome assembly, contig: 60.NODE_244_length_121609_cov_76.046455, whole genome shotgun sequence

⇒Summary: seq-len = 121659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120291-120919 bp Zoom in on locus 1 x11 CRISPR array Location: 120291-120919 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 120291-120919 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120291-120919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)