CRISPRone

CRISPRone report for GCA_900143945.1_26

♦ Seq 1: FRGU01000011.1 Pseudomonas aeruginosa isolate 26 genome assembly, contig: 26.NODE_11_length_703000_cov_70.142998, whole genome shotgun sequence

⇒Summary: seq-len = 703050 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 490487-491595 bp Zoom in on locus 1 x19 CRISPR array Location: 490487-491595 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 490487-491595 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 490487-491595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGU01000068.1 Pseudomonas aeruginosa isolate 26 genome assembly, contig: 26.NODE_135_length_49522_cov_65.360085, whole genome shotgun sequence

⇒Summary: seq-len = 49572 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 683-12250 bp Zoom in on locus 1 x30 x15 CRISPR array Location: 683-2453 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 683-2453 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 2713-3687 bp Gene: COG1203:cas3 Type: Type-I Location: 3684-6914 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7325-8626 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8613-9596 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9607-10635 bp Gene: cd09739:cas6f Type: other Location: 10639-11202 bp CRISPR array Location: 11387-12250 bp Num of repeats: 15 Spacers: s30-s43 CRISPR array Location: 11387-12250 bp Num of repeats: 15 Spacers: s30-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 683-2453 bp]: array | spacers
           [Locus range 11387-12250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRGU01000005.1 Pseudomonas aeruginosa isolate 26 genome assembly, contig: 26.NODE_5_length_459594_cov_69.014244, whole genome shotgun sequence

⇒Summary: seq-len = 459644 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331127-338524 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 331127-332029 bp Gene: COG4804:PD-DExK Type: other Location: 332870-334006 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 338069-338524 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)