CRISPRone

CRISPRone report for GCA_900143955.1_37

♦ Seq 1: FRGD01000085.1 Pseudomonas aeruginosa isolate 37 genome assembly, contig: 37.NODE_95_length_230830_cov_40.253136, whole genome shotgun sequence

⇒Summary: seq-len = 230886 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212903-214011 bp Zoom in on locus 1 x19 CRISPR array Location: 212903-214011 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 212903-214011 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 212903-214011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGD01000203.1 Pseudomonas aeruginosa isolate 37 genome assembly, contig: 37.NODE_317_length_37351_cov_37.219807, whole genome shotgun sequence

⇒Summary: seq-len = 37407 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25150-36717 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 25150-26014 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25150-26014 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26198-26761 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 26765-27793 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27804-28787 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28774-30075 bp Gene: COG1203:cas3 Type: Type-I Location: 30486-33716 bp Gene: cd09718:cas1 Type: universal Location: 33713-34687 bp CRISPR array Location: 34948-36717 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 34948-36717 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25150-26014 bp]: array | spacers
           [Locus range 34948-36717 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)