CRISPRone

CRISPRone report for GCA_900143975.1_30

♦ Seq 1: FUEJ01000168.1 Pseudomonas aeruginosa isolate 30 genome assembly, contig: 30.NODE_244_length_97771_cov_58.670700, whole genome shotgun sequence

⇒Summary: seq-len = 97825 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80238-87635 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80238-80693 bp Gene: COG4804:PD-DExK Type: other Location: 84756-85892 bp Gene: unk Type: unknown Location: 85938-86726 bp Gene: pfam13280:WYL Type: other Location: 86733-87635 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUEJ01000176.1 Pseudomonas aeruginosa isolate 30 genome assembly, contig: 30.NODE_272_length_37356_cov_56.662838, whole genome shotgun sequence

⇒Summary: seq-len = 37410 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25155-36722 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 25155-26019 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25155-26019 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26203-26766 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 26770-27798 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27809-28792 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28779-30080 bp Gene: COG1203:cas3 Type: Type-I Location: 30491-33721 bp Gene: cd09718:cas1 Type: universal Location: 33718-34692 bp CRISPR array Location: 34953-36722 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 34953-36722 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25155-26019 bp]: array | spacers
           [Locus range 34953-36722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUEJ01000080.1 Pseudomonas aeruginosa isolate 30 genome assembly, contig: 30.NODE_89_length_394713_cov_61.641132, whole genome shotgun sequence

⇒Summary: seq-len = 394767 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376869-377977 bp Zoom in on locus 1 x19 CRISPR array Location: 376869-377977 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 376869-377977 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 376869-377977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)