CRISPRone

CRISPRone report for GCA_900143995.1_40

♦ Seq 1: FRFX01000085.1 Pseudomonas aeruginosa isolate 40 genome assembly, contig: 40.NODE_203_length_49530_cov_48.529072, whole genome shotgun sequence

⇒Summary: seq-len = 49586 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 691-12258 bp Zoom in on locus 1 x30 x15 CRISPR array Location: 691-2461 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 691-2461 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 2721-3695 bp Gene: COG1203:cas3 Type: Type-I Location: 3692-6922 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7333-8634 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8621-9604 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9615-10643 bp Gene: cd09739:cas6f Type: other Location: 10647-11210 bp CRISPR array Location: 11395-12258 bp Num of repeats: 15 Spacers: s30-s43 CRISPR array Location: 11395-12258 bp Num of repeats: 15 Spacers: s30-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 691-2461 bp]: array | spacers
           [Locus range 11395-12258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFX01000004.1 Pseudomonas aeruginosa isolate 40 genome assembly, contig: 40.NODE_4_length_98317_cov_52.412380, whole genome shotgun sequence

⇒Summary: seq-len = 98373 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80440-87837 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80440-80895 bp Gene: COG4804:PD-DExK Type: other Location: 84958-86094 bp Gene: unk Type: unknown Location: 86140-86928 bp Gene: pfam13280:WYL Type: other Location: 86935-87837 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRFX01000003.1 Pseudomonas aeruginosa isolate 40 genome assembly, contig: 40.NODE_3_length_706163_cov_54.793484, whole genome shotgun sequence

⇒Summary: seq-len = 706219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 211814-212921 bp Zoom in on locus 1 x19 CRISPR array Location: 211814-212921 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 211814-212921 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 211814-212921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)