CRISPRone

CRISPRone report for GCA_900144005.1_76

♦ Seq 1: FRFO01000029.1 Pseudomonas aeruginosa isolate 76 genome assembly, contig: 76.NODE_30_length_198874_cov_58.633934, whole genome shotgun sequence

⇒Summary: seq-len = 198928 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37198-47046 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 37198-37706 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37198-37706 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37955-38518 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38522-39550 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39561-40544 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40531-41835 bp Gene: COG1203:cas3 Type: Type-I Location: 41893-45123 bp Gene: cd09718:cas1 Type: universal Location: 45120-46094 bp CRISPR array Location: 46359-47046 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 46359-47046 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37198-37706 bp]: array | spacers
           [Locus range 46359-47046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRFO01000050.1 Pseudomonas aeruginosa isolate 76 genome assembly, contig: 76.NODE_65_length_19311_cov_58.913780, whole genome shotgun sequence

⇒Summary: seq-len = 19365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281-2169 bp Zoom in on locus 1 x32 CRISPR array Location: 281-2169 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 281-2169 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 281-2169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)