CRISPRone

CRISPRone report for GCA_900144025.1_59

♦ Seq 1: FRGI01000079.1 Pseudomonas aeruginosa isolate 59 genome assembly, contig: 59.NODE_91_length_185578_cov_67.948853, whole genome shotgun sequence

⇒Summary: seq-len = 185628 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25841-37768 bp Zoom in on locus 1 x27 x24 CRISPR array Location: 25841-27426 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 25841-27426 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 27610-28173 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28177-29205 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29216-30199 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 30186-31487 bp Gene: COG1203:cas3 Type: Type-I Location: 31898-35128 bp Gene: cd09718:cas1 Type: universal Location: 35125-36099 bp CRISPR array Location: 36360-37768 bp Num of repeats: 24 Spacers: s27-s49 CRISPR array Location: 36360-37768 bp Num of repeats: 24 Spacers: s27-s49 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25841-27426 bp]: array | spacers
           [Locus range 36360-37768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGI01000033.1 Pseudomonas aeruginosa isolate 59 genome assembly, contig: 59.NODE_34_length_499475_cov_68.415947, whole genome shotgun sequence

⇒Summary: seq-len = 499525 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 378622-379251 bp Zoom in on locus 1 x11 CRISPR array Location: 378622-379251 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 378622-379251 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 378622-379251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)