CRISPRone

CRISPRone report for GCA_900144055.1_64

♦ Seq 1: FRGS01000002.1 Pseudomonas aeruginosa isolate 64 genome assembly, contig: 64.NODE_2_length_230286_cov_54.824200, whole genome shotgun sequence

⇒Summary: seq-len = 230342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16835-17463 bp Zoom in on locus 1 x11 CRISPR array Location: 16835-17463 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16835-17463 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16835-17463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGS01000115.1 Pseudomonas aeruginosa isolate 64 genome assembly, contig: 64.NODE_126_length_132351_cov_51.106030, whole genome shotgun sequence

⇒Summary: seq-len = 132407 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94577-106564 bp Zoom in on locus 1 x25 x27 CRISPR array Location: 94577-96046 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 94577-96046 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 96306-97280 bp Gene: COG1203:cas3 Type: Type-I Location: 97277-100507 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 100918-102219 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 102206-103189 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 103200-104228 bp Gene: cd09739:cas6f Type: other Location: 104232-104795 bp CRISPR array Location: 104980-106564 bp Num of repeats: 27 Spacers: s25-s50 CRISPR array Location: 104980-106564 bp Num of repeats: 27 Spacers: s25-s50 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94577-96046 bp]: array | spacers
           [Locus range 104980-106564 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)