CRISPRone

CRISPRone report for GCA_900144095.1_28

♦ Seq 1: FRGO01000048.1 Pseudomonas aeruginosa isolate 28 genome assembly, contig: 28.NODE_51_length_280163_cov_56.956303, whole genome shotgun sequence

⇒Summary: seq-len = 280215 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262204-263312 bp Zoom in on locus 1 x19 CRISPR array Location: 262204-263312 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 262204-263312 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262204-263312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGO01000057.1 Pseudomonas aeruginosa isolate 28 genome assembly, contig: 28.NODE_60_length_130404_cov_55.020107, whole genome shotgun sequence

⇒Summary: seq-len = 130456 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80412-87809 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80412-80867 bp Gene: COG4804:PD-DExK Type: other Location: 84930-86066 bp Gene: unk Type: unknown Location: 86112-86900 bp Gene: pfam13280:WYL Type: other Location: 86907-87809 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRGO01000155.1 Pseudomonas aeruginosa isolate 28 genome assembly, contig: 28.NODE_241_length_49526_cov_50.755543, whole genome shotgun sequence

⇒Summary: seq-len = 49578 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 687-12254 bp Zoom in on locus 1 x30 x15 CRISPR array Location: 687-2457 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 687-2457 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 2717-3691 bp Gene: COG1203:cas3 Type: Type-I Location: 3688-6918 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7329-8630 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8617-9600 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9611-10639 bp Gene: cd09739:cas6f Type: other Location: 10643-11206 bp CRISPR array Location: 11391-12254 bp Num of repeats: 15 Spacers: s30-s43 CRISPR array Location: 11391-12254 bp Num of repeats: 15 Spacers: s30-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 687-2457 bp]: array | spacers
           [Locus range 11391-12254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)