CRISPRone

CRISPRone report for GCA_900144115.1_25

♦ Seq 1: FRGM01000043.1 Pseudomonas aeruginosa isolate 25 genome assembly, contig: 25.NODE_48_length_48429_cov_43.779160, whole genome shotgun sequence

⇒Summary: seq-len = 48489 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 276-10334 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 276-844 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 276-844 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1095-2069 bp Gene: COG1203:cas3 Type: Type-I Location: 2066-5296 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5707-7008 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6995-7978 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7989-9017 bp Gene: cd09739:cas6f Type: other Location: 9021-9584 bp CRISPR array Location: 9768-10334 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 9768-10334 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 276-844 bp]: array | spacers
           [Locus range 9768-10334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGM01000050.1 Pseudomonas aeruginosa isolate 25 genome assembly, contig: 25.NODE_64_length_64663_cov_51.194237, whole genome shotgun sequence

⇒Summary: seq-len = 64723 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15870-24610 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15870-16739 bp Gene: unk Type: unknown Location: 17080-17292 bp Gene: unk Type: unknown Location: 17398-19536 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19536-21317 bp Gene: unk Type: unknown Location: 19776-19973 bp Gene: unk Type: unknown Location: 21607-21822 bp Gene: cd09639:cas3 Type: Type-I Location: 22085-24610 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRGM01000038.1 Pseudomonas aeruginosa isolate 25 genome assembly, contig: 25.NODE_41_length_162198_cov_45.923962, whole genome shotgun sequence

⇒Summary: seq-len = 162258 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278-847 bp Zoom in on locus 1 x10 CRISPR array Location: 278-847 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 278-847 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 278-847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)