CRISPRone

CRISPRone report for GCA_900144195.1_79

♦ Seq 1: FRGZ01000085.1 Pseudomonas aeruginosa isolate 79 genome assembly, contig: 79.NODE_91_length_103235_cov_66.248291, whole genome shotgun sequence

⇒Summary: seq-len = 103301 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68610-78458 bp Zoom in on locus 1 x12 x9 CRISPR array Location: 68610-69298 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 68610-69298 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 69562-70536 bp Gene: COG1203:cas3 Type: Type-I Location: 70533-73763 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 73821-75125 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 75112-76095 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 76106-77134 bp Gene: cd09739:cas6f Type: other Location: 77138-77701 bp CRISPR array Location: 77951-78458 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 77951-78458 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 68610-69298 bp]: array | spacers
           [Locus range 77951-78458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGZ01000004.1 Pseudomonas aeruginosa isolate 79 genome assembly, contig: 79.NODE_4_length_157407_cov_70.070007, whole genome shotgun sequence

⇒Summary: seq-len = 157473 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16433-18320 bp Zoom in on locus 1 x32 CRISPR array Location: 16433-18320 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 16433-18320 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16433-18320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)