CRISPRone

CRISPRone report for GCA_900144205.1_78

♦ Seq 1: FRHB01000132.1 Pseudomonas aeruginosa isolate 78 genome assembly, contig: 78.NODE_179_length_47256_cov_94.788849, whole genome shotgun sequence

⇒Summary: seq-len = 47300 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37182-47030 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 37182-37690 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37182-37690 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37939-38502 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38506-39534 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39545-40528 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40515-41819 bp Gene: COG1203:cas3 Type: Type-I Location: 41877-45107 bp Gene: cd09718:cas1 Type: universal Location: 45104-46078 bp CRISPR array Location: 46343-47030 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 46343-47030 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37182-37690 bp]: array | spacers
           [Locus range 46343-47030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHB01000047.1 Pseudomonas aeruginosa isolate 78 genome assembly, contig: 78.NODE_59_length_114842_cov_97.874878, whole genome shotgun sequence

⇒Summary: seq-len = 114886 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96311-98199 bp Zoom in on locus 1 x32 CRISPR array Location: 96311-98199 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 96311-98199 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 96311-98199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)