CRISPRone

CRISPRone report for GCA_900144225.1_33

♦ Seq 1: FRGT01000090.1 Pseudomonas aeruginosa isolate 33 genome assembly, contig: 33.NODE_210_length_48425_cov_56.546597, whole genome shotgun sequence

⇒Summary: seq-len = 48481 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272-10330 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 272-840 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 272-840 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1091-2065 bp Gene: COG1203:cas3 Type: Type-I Location: 2062-5292 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5703-7004 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6991-7974 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7985-9013 bp Gene: cd09739:cas6f Type: other Location: 9017-9580 bp CRISPR array Location: 9764-10330 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 9764-10330 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272-840 bp]: array | spacers
           [Locus range 9764-10330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRGT01000059.1 Pseudomonas aeruginosa isolate 33 genome assembly, contig: 33.NODE_100_length_96689_cov_59.788891, whole genome shotgun sequence

⇒Summary: seq-len = 96745 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15866-24606 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15866-16735 bp Gene: unk Type: unknown Location: 17076-17288 bp Gene: unk Type: unknown Location: 17394-19532 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19529-21313 bp Gene: cd09639:cas3 Type: Type-I Location: 22240-24606 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRGT01000101.1 Pseudomonas aeruginosa isolate 33 genome assembly, contig: 33.NODE_290_length_209609_cov_55.746372, whole genome shotgun sequence

⇒Summary: seq-len = 209665 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208824-209392 bp Zoom in on locus 1 x10 CRISPR array Location: 208824-209392 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 208824-209392 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208824-209392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)