CRISPRone

CRISPRone report for GCA_900144235.1_82

♦ Seq 1: FRHD01000030.1 Pseudomonas aeruginosa isolate 82 genome assembly, contig: 82.NODE_34_length_47278_cov_70.539909, whole genome shotgun sequence

⇒Summary: seq-len = 47338 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37204-47052 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 37204-37712 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37204-37712 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 37961-38524 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38528-39556 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39567-40550 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40537-41841 bp Gene: COG1203:cas3 Type: Type-I Location: 41899-45129 bp Gene: cd09718:cas1 Type: universal Location: 45126-46100 bp CRISPR array Location: 46365-47052 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 46365-47052 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37204-37712 bp]: array | spacers
           [Locus range 46365-47052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHD01000011.1 Pseudomonas aeruginosa isolate 82 genome assembly, contig: 82.NODE_12_length_628340_cov_71.433273, whole genome shotgun sequence

⇒Summary: seq-len = 628400 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 298123-300011 bp Zoom in on locus 1 x32 CRISPR array Location: 298123-300011 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 298123-300011 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 298123-300011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)