CRISPRone

CRISPRone report for GCA_900144255.1_85

♦ Seq 1: FRHG01000117.1 Pseudomonas aeruginosa isolate 85 genome assembly, contig: 85.NODE_177_length_67137_cov_53.224972, whole genome shotgun sequence

⇒Summary: seq-len = 67187 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20632-30000 bp Zoom in on locus 1 x4 x9 CRISPR array Location: 20632-20840 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20632-20840 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 21104-22078 bp Gene: COG1203:cas3 Type: Type-I Location: 22075-25305 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25363-26667 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26654-27637 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27648-28676 bp Gene: cd09739:cas6f Type: other Location: 28680-29243 bp CRISPR array Location: 29493-30000 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 29493-30000 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20632-20840 bp]: array | spacers
           [Locus range 29493-30000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRHG01000081.1 Pseudomonas aeruginosa isolate 85 genome assembly, contig: 85.NODE_100_length_156969_cov_65.496010, whole genome shotgun sequence

⇒Summary: seq-len = 157019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154322-156209 bp Zoom in on locus 1 x32 CRISPR array Location: 154322-156209 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 154322-156209 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154322-156209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)